The Tour of Collective Wisdom presents:
Desert Island Protecting Groups


Choosing a good protecting group for your molecule can save a lot of time. The choices, however, are often overwhelming (T. Green, Protecting Groups in Organic Synthesis). Protecting groups are listed below in order of popularity.

Protecting group:
I often use this I sometimes use this I avoid this
Verification:
Protecting group Use this often Use this sometimes Avoid using this I use this...
t-butoxycarbonyl (BOC)212537 often sometimes avoid
t-butyldimethylsilyl (TBS or TBDMS)1564925 often sometimes avoid
benzyl1015915 often sometimes avoid
benzyloxycarbonyl (CBZ)726117 often sometimes avoid
acetyl615922 often sometimes avoid
p-methoxybenzyl (PMB)444519 often sometimes avoid
triisopropylsilyl (TIPS)324012 often sometimes avoid
methyl ester24157 often sometimes avoid
t-butyldiphenylsilyl (TBDPS)313715 often sometimes avoid
Trimethylsilane (TMS)354424 often sometimes avoid
9-fluorenyl methyloxycarbonyl (FMOC)383532 often sometimes avoid
1,3-dioxolane1097 often sometimes avoid
2,2-dimethoxypropane987 often sometimes avoid
toluenesulfonyl ethyl ester302 often sometimes avoid
Trimethylsilane (TMS)231 often sometimes avoid
triethylsilyl (TES)4113 often sometimes avoid
fmoc100 often sometimes avoid
allyl ester9109 often sometimes avoid
CBZ020 often sometimes avoid
benzyl ether (OBn)778 often sometimes avoid
t-butyl ester6137 often sometimes avoid
benzylidene91211 often sometimes avoid
Trichloroacetyl577 often sometimes avoid
isopropylidene71410 often sometimes avoid
dioxolane71010 often sometimes avoid
Trifluoroacetyl71212 often sometimes avoid
allyloxycarbonyl (alloc)91514 often sometimes avoid
OTs017 often sometimes avoid
DMAS2311 often sometimes avoid
TEOC 2-(trimethylsilyl) ethoxycarbonyl5915 often sometimes avoid
trityl113421 often sometimes avoid
pivaloyl143526 often sometimes avoid
TMSE 2 (trimethylsilyl) ethyl61319 often sometimes avoid
beta-methoxyethoxymethyl chloride6921 often sometimes avoid
methoxymethyl (MOM)143929 often sometimes avoid
trichloroethoxycarbonyl (Troc)82127 often sometimes avoid
methyl222542 often sometimes avoid
SEM 2 (trimethylsilyl) ethoxymethane121833 often sometimes avoid
tetrahydropyranyl (THP)223743 often sometimes avoid
2-naphthylmethyl (NAP)71231 often sometimes avoid
1,2 or 1,3 dithiane61031 often sometimes avoid